Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs11009057 | chr10:33027691 | C/T | 3.31E-6 | 506 | 37.37 | 37.63 | 7.33 | KM Plot |
KIRC | rs11009072 | chr10:33054716 | A/G | 3.25E-6 | 506 | 37.37 | 37.5 | 7.33 | KM Plot |
KIRC | rs11009075 | chr10:33058280 | T/C | 3.25E-6 | 506 | 37.37 | 37.5 | 7.33 | KM Plot |
KIRC | rs11009079 | chr10:33065971 | C/T | 3.25E-6 | 506 | 37.37 | 37.5 | 7.33 | KM Plot |
KIRC | rs11084406 | chr19:56156447 | A/G | 2.84E-8 | 509 | 37.75 | 36.12 | 7.4 | KM Plot |
KIRC | rs111252301 | chr11:1547195 | C/T | 8.06E-5 | 507 | 37.4 | 37.45 | 5.47 | KM Plot |
KIRC | rs11130164 | chr3:48369034 | G/A | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs11132131 | chr4:169169891 | A/G | 2.18E-8 | 508 | 37.35 | 37.67 | 3.1 | KM Plot |
KIRC | rs111366715 | chr10:32959473 | C/T | 3.31E-6 | 505 | 37.57 | 37.5 | 7.33 | KM Plot |
KIRC | rs111386720 | chr19:46302145 | G/A | 2.16E-8 | 491 | 38.83 | 28.65 | 1.77 | KM Plot |
KIRC | rs111404322 | chr19:46360739 | C/T | 9.66E-8 | 503 | 38.83 | 28.65 | 1.77 | KM Plot |
KIRC | rs111441980 | chr16:2946325 | A/G | 9.53E-6 | 501 | 36.97 | 40.25 | 3.37 | KM Plot |
KIRC | rs111498228 | chr15:24340653 | C/A | 1.82E-8 | 502 | 37.42 | 35.83 | 3.3 | KM Plot |
KIRC | rs111540699 | chr16:2945429 | C/T | 2.1E-5 | 502 | 36.9 | 41.27 | 1.98 | KM Plot |
KIRC | rs111575564 | chr4:107876430 | TC/T | 3.63E-11 | 506 | 37.73 | 30.2 | 5.53 | KM Plot |